Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA0426Cytochrome c family protein. (916 aa)    
Predicted Functional Partners:
MCA0427
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.827
MCA1209
Formate dehydrogenase, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
  
 
 0.648
MCA0318
Putative SCO1/SenC family protein/methylamine utilization protein MauG; Identified by similarity to SP:Q49128; match to protein family HMM PF03150.
      
 0.618
MCA0421
Cytochrome c5530 family protein.
      
 0.618
MCA0440
Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; match to protein family HMM PF07715.
      
 0.618
MCA0524
Cytochrome P460; Identified by similarity to GP:3659895.
      
 0.618
MCA0940
Cytochrome c family protein; Identified by similarity to GP:15979130; match to protein family HMM PF00034.
      
 0.618
MCA1068
Cytochrome c family protein; Identified by similarity to SP:Q52369; match to protein family HMM PF00034.
      
 0.618
MCA1185
Cytochrome c family protein; Identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034.
      
 0.618
MCA1585
Putative fatty acid cis/trans isomerase; Identified by similarity to GP:5257178; match to protein family HMM PF06934.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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