Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA0440Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; match to protein family HMM PF07715. (775 aa)    
Predicted Functional Partners:
MCA0441
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
 
 0.820
MCA1186
Putative membrane protein.
  
   
 0.731
MCA1906
Identified by similarity to SP:Q51658; match to protein family HMM PF03150.
  
   
 0.710
MCA0443
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:P05829; match to protein family HMM PF02472.
  
    0.697
MCA0442
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618.
  
    0.680
mopB
Outer membrane protein MopB; Identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412.
      
 0.643
MCA0318
Putative SCO1/SenC family protein/methylamine utilization protein MauG; Identified by similarity to SP:Q49128; match to protein family HMM PF03150.
     
 0.630
MCA0426
Cytochrome c family protein.
      
 0.618
MCA0427
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA0447
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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