Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
MCA0443Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:P05829; match to protein family HMM PF02472. (136 aa)    
Predicted Functional Partners:
MCA0442
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618.
 
 
 0.980
MCA0669
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618.
 
 
 0.925
tolQ
tolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.924
MCA0441
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.887
pal
OmpA family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.730
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.718
MCA0440
Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.697
MCA0631
MotA/TolQ/ExbB proton channel family domain protein; Identified by match to protein family HMM PF01618.
 
 
 0.656
MCA2238
MotA/TolQ/ExbB proton channel family domain protein; Identified by match to protein family HMM PF01618.
 
 
 0.654
MCA0668
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.642
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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