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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0458Putative cysteine rich repeat domain protein; Identified by match to protein family HMM PF00839. (148 aa)    
Predicted Functional Partners:
MCA0456
GGDEF family protein; Identified by similarity to OMNI:VCA0960; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.613
MCA0457
Hypothetical protein; Identified by Glimmer2; putative.
       0.613
MCA0685
Conserved domain protein; Identified by similarity to GP:3462874; match to protein family HMM PF03734.
  
     0.606
MCA2189
Cytochrome c family protein.
  
     0.488
MCA0459
Hypothetical protein; Identified by Glimmer2; putative.
       0.464
MCA2198
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.431
MCA0460
Ferredoxin, 4Fe-4S; Identified by similarity to GP:1518927; match to protein family HMM PF00037.
       0.413
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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