Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0468Putative moxR protein; Identified by similarity to GP:18892502; match to protein family HMM PF07726; match to protein family HMM PF07728. (303 aa)    
Predicted Functional Partners:
MCA0466
Identified by match to protein family HMM PF01841.
 
   
 0.948
MCA0467
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA02874; match to protein family HMM PF01882.
 
  
 0.938
cbbO
cbbO protein; Identified by similarity to GP:4433775; match to protein family HMM PF00092.
  
 
 0.496
MCA0469
Conserved hypothetical protein.
       0.488
MCA3083
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03071; match to protein family HMM PF01882.
 
  
 0.479
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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