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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0471Identified by match to protein family HMM PF02366. (583 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
  0.928
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
  
 0.927
MCA0374
Glycosyl transferase, group 2 family protein; Identified by similarity to OMNI:CC0469; match to protein family HMM PF00535.
  
 0.807
MCA0472
Asparagine synthetase, glutamine-hydrolyzing; Identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
       0.778
MCA2193
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.743
MCA2574
Conserved hypothetical protein; Identified by similarity to GP:12698380.
  
     0.624
MCA2187
Identified by match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.
  
     0.585
MCA0908
ATPase, AAA family; Identified by match to protein family HMM PF00004.
  
     0.537
MCA2285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.537
MCA1497
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.525
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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