MCA0477 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA0477

Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724. (330 aa)

Predicted Functional Partners:

MCA0478

0.999

pxpA

0.998

gatA

0.915

accC

0.910

MCA1131

0.809

MCA0950

0.689

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0477	MCA0478	MCA0477	MCA0478	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	0.999
MCA0477	MCA0950	MCA0477	MCA0950	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	0.689
MCA0477	MCA1131	MCA0477	MCA1131	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	0.809
MCA0477	accC	MCA0477	MCA1046	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.910
MCA0477	gatA	MCA0477	MCA0098	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).	0.915
MCA0477	pxpA	MCA0477	MCA0476	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	0.998
MCA0478	MCA0477	MCA0478	MCA0477	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.999
MCA0478	MCA1131	MCA0478	MCA1131	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	0.875
MCA0478	accC	MCA0478	MCA1046	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.800
MCA0478	pxpA	MCA0478	MCA0476	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	0.999
MCA0950	MCA0477	MCA0950	MCA0477	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.689
MCA1131	MCA0477	MCA1131	MCA0477	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.809
MCA1131	MCA0478	MCA1131	MCA0478	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	0.875
MCA1131	pxpA	MCA1131	MCA0476	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	0.708
accC	MCA0477	MCA1046	MCA0477	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.910
accC	MCA0478	MCA1046	MCA0478	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.	0.800
accC	gatA	MCA1046	MCA0098	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).	0.912
gatA	MCA0477	MCA0098	MCA0477	glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.915
gatA	accC	MCA0098	MCA1046	glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.912
pxpA	MCA0477	MCA0476	MCA0477	Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.998

page 1 of 2

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About