Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0498Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMA00697; match to protein family HMM PF07298. (226 aa)    
Predicted Functional Partners:
MCA0878
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML2446.
  
     0.652
phhB
Pterin-4-alpha-carbinolamine dehydratase; Identified by similarity to SP:P43335; match to protein family HMM PF01329.
       0.498
MCA0499
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04177; match to protein family HMM PF04828.
       0.475
MCA0500
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
MCA0873
ATP-dependent protease La domain protein.
  
     0.471
MCA0943
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.458
MCA0042
Antioxidant, AhpC/Tsa family; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
  
     0.417
MCA0496
Conserved hypothetical protein TIGR01777; Identified by similarity to OMNI:NTL03PA04657; match to protein family HMM PF07993; match to protein family HMM TIGR01777.
  
    0.405
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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