Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0512Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00598; Belongs to the UPF0753 family. (1073 aa)    
Predicted Functional Partners:
MCA0513
Putative NADH ubiquinone/plastoquinone complex subunit; Identified by similarity to GP:17221967; match to protein family HMM PF00361; match to protein family HMM PF00662.
 
 
 0.959
nuoL
NADH dehydrogenase I, L subunit; Identified by similarity to SP:P33607; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974.
  
 
 0.848
MCA1701
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.748
MCA2112
Conserved hypothetical protein; Identified by similarity to GP:4378852.
  
     0.734
MCA0514
Putative NADH ubiquinone/plastoquinone complex subunit; Identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972.
 
     0.732
MCA0491
Conserved hypothetical protein; Identified by similarity to GP:4378852.
  
     0.722
MCA0511
Putative NADH ubiquinone/plastoquinone complex subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.
 
     0.650
MCA0515
Putative NADH ubiquinone/plastoquinone complex subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
 
     0.631
MCA1084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.532
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
  
     0.470
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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