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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0521Conserved hypothetical protein; Identified by similarity to OMNI:NTL01ST1808; match to protein family HMM PF05779; Belongs to the UPF0260 family. (147 aa)    
Predicted Functional Partners:
MCA0520
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA0522
Hypothetical protein; Identified by Glimmer2; putative.
       0.686
MCA0523
Putative peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P45523; match to protein family HMM PF00254.
       0.610
MCA0263
Identified by similarity to OMNI:NTL01BM1881; match to protein family HMM PF01557.
      0.567
MCA0519
MutT/nudix family protein; Identified by similarity to GP:1001228; match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
       0.553
MCA1552
ArsC family protein; Identified by similarity to OMNI:NTL01SM00306; match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.
  
     0.503
MCA0046
MazG family protein; Identified by similarity to OMNI:CC1747; match to protein family HMM PF03819; match to protein family HMM TIGR00444.
  
     0.481
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.431
mltB
Membrane-bound lytic transglycosylase B; Identified by similarity to SP:P41052; match to protein family HMM TIGR02282.
     0.426
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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