Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA0550DNA methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF04480. (1192 aa)    
Predicted Functional Partners:
MCA0551
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TV1471; match to protein family HMM PF04851.
 
   
 0.892
MCA0026
Putative type III restriction-modification system, R subunit; Identified by similarity to SP:P08764; match to protein family HMM PF04851.
 
   
 0.416
MCA2682
Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
   
 0.400
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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