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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0553Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851. (1061 aa)    
Predicted Functional Partners:
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
    0.765
MCA0555
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.
     
 0.746
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
  
     0.733
MCA0554
HlyD family secretion protein; Identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529.
       0.625
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
 
    0.551
MCA0552
Hypothetical protein; Identified by Glimmer2; putative.
       0.550
MCA1924
ABC transporter, permease family protein; Identified by similarity to OMNI:TM0812; match to protein family HMM PF00528.
 
     0.544
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 
     0.537
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.528
MCA2605
Alpha amylase family protein; Identified by similarity to GP:6409238; match to protein family HMM PF00128.
 
   
 0.522
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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