Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0553Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851. (1061 aa)    
Predicted Functional Partners:
MCA0555
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.
     
 0.850
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
    0.758
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
  
     0.733
MCA2227
Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
      
 0.643
MCA0554
HlyD family secretion protein; Identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529.
       0.625
MCA0303
Putative lipoprotein; Identified by match to protein family HMM PF05229.
      
 0.618
MCA0306
Putative spore coat protein, late developmental; Identified by similarity to SP:P27755; match to protein family HMM PF05229.
      
 0.618
MCA1082
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA1277
Putative outer membrane protein TolC; Identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
      
 0.618
MCA1809
ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005.
   
  
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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