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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0554HlyD family secretion protein; Identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529. (321 aa)    
Predicted Functional Partners:
MCA0555
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.
  
 0.965
MCA0557
ABC transporter, permease protein; Identified by similarity to SP:P31993; match to protein family HMM PF01061.
  
 0.864
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
  
  
 0.647
MCA0553
Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.
       0.625
MCA1362
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.489
MCA0284
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.480
MCA2326
Conserved domain protein.
  
   0.473
MCA1277
Putative outer membrane protein TolC; Identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.456
MCA0552
Hypothetical protein; Identified by Glimmer2; putative.
       0.454
MCA1204
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.439
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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