STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0557ABC transporter, permease protein; Identified by similarity to SP:P31993; match to protein family HMM PF01061. (379 aa)    
Predicted Functional Partners:
MCA0554
HlyD family secretion protein; Identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529.
  
 0.864
MCA1561
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005.
  
 0.722
MCA0555
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.
 
 
0.699
MCA0558
Conserved domain protein; Identified by similarity to OMNI:NTL01AT2375.
       0.648
MCA1280
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005.
 
  
 0.598
MCA1484
Carbohydrate efflux ABC transporter, ATP-binding protein, NodI family; Identified by similarity to SP:P72335; match to protein family HMM PF00005.
 
  
 0.596
MCA3078
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005.
 
  
 0.568
MCA0556
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
MCA0742
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45073; match to protein family HMM PF00005.
   
  0.542
MCA2122
ABC transporter, ATP-binding protein; Identified by similarity to SP:P36879; match to protein family HMM PF00005.
 
  
 0.427
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.