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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0564Hypothetical protein; Identified by Glimmer2; putative. (105 aa)    
Predicted Functional Partners:
MCA0863
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01616.
  
     0.707
MCA3062
Putative hemY protein; Identified by similarity to SP:P09128; match to protein family HMM PF00515; match to protein family HMM PF07219.
  
     0.644
glnD
protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism.
       0.642
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.642
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
  
     0.629
MCA2036
Putative membrane protein; Identified by similarity to OMNI:NTL03PA04934.
  
     0.614
MCA2739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.606
MCA1366
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.604
MCA2081
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.601
MCA1825
Conserved hypothetical protein; Identified by similarity to GP:17131822.
  
     0.587
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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