Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0580Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724. (144 aa)    
Predicted Functional Partners:
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
   
 0.839
MCA0581
Site-specific recombinase, phage integrase family domain protein.
       0.773
MCA2643
Conserved hypothetical protein; Identified by similarity to GP:17427847.
   
 0.760
MCA1130
Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
    
  0.709
MCA0523
Putative peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P45523; match to protein family HMM PF00254.
    
 
 0.695
MCA1625
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS02064; match to protein family HMM PF05685.
  
     0.509
MCA2162
Conserved hypothetical protein; Identified by similarity to GP:17132783; match to protein family HMM PF05685.
  
     0.467
MCA1143
Conserved hypothetical protein; Identified by similarity to GP:17132082; match to protein family HMM PF05685.
  
     0.451
MCA0408
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00205.
  
     0.447
MCA2117
Rhodanese-like domain/ankyrin repeat domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
   
  0.427
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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