Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0613Identified by similarity to GP:6690125; match to protein family HMM PF00534. (341 aa)    
Predicted Functional Partners:
galE-1
UDP-glucose 4-epimerase; Identified by similarity to SP:Q56623; match to protein family HMM PF07993.
 
    0.836
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
  
 0.818
MCA2415
Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
 
     0.720
MCA0611
Putative mercuric ion binding protein; Identified by similarity to GP:2935549; match to protein family HMM PF00403; match to protein family HMM TIGR00003.
       0.608
MCA0474
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
    
   0.565
MCA0618
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.563
MCA0614
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
MCA0903
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
 
  
 0.548
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.463
MCA2414
Glycosyl transferase, group 1 family domain protein; Identified by match to protein family HMM PF00534.
  
     0.444
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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