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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0619Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (311 aa)    
Predicted Functional Partners:
MCA0618
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
    0.924
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
  
 0.889
MCA0620
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
    
0.793
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.778
MCA0617
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA0621
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.739
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.686
MCA0622
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.642
MCA2561
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     0.600
MCA2033
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.555
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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