Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA0625Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005. (417 aa)    
Predicted Functional Partners:
MCA0626
Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.
 
 0.997
MCA2550
Efflux ABC-transporter, permease protein.
 
 0.990
MCA2549
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.919
MCA1483
Carbohydrate efflux ABC transporter, permease protein, NodJ family; Identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291.
  
 
 0.790
MCA0624
Conserved hypothetical protein; Identified by similarity to GP:1890598.
       0.777
MCA0620
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.733
MCA2561
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.673
MCA0622
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
    0.669
MCA0623
Conserved domain protein; Identified by similarity to GP:11641086.
       0.639
MCA0621
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
    0.613
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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