Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0708Identified by similarity to GP:17132891; match to protein family HMM PF00535. (604 aa)    
Predicted Functional Partners:
MCA0709
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.952
MCA0003
Identified by match to protein family HMM PF01656.
  
 
 0.737
MCA0710
Putative lipoprotein; Identified by similarity to OMNI:NTL03PA02230.
       0.618
MCA0711
Putative ribonuclease BN; Identified by similarity to OMNI:VC2742; match to protein family HMM PF03631; match to protein family HMM TIGR00765.
  
    0.573
rlmL
Putative methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.544
groEL-1
Chaperonin, 60 kDa subunit; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
   0.508
acyP
Acylphosphatase; Identified by similarity to SP:O29440; match to protein family HMM PF00708.
       0.498
MCA1204
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.469
MCA0305
Putative chaperone protein pmfD; Identified by similarity to SP:P53520.
  
     0.449
MCA1686
Anti-sigma B factor antagonist; Identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
    0.421
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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