STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0710Putative lipoprotein; Identified by similarity to OMNI:NTL03PA02230. (189 aa)    
Predicted Functional Partners:
MCA0711
Putative ribonuclease BN; Identified by similarity to OMNI:VC2742; match to protein family HMM PF03631; match to protein family HMM TIGR00765.
       0.714
rlmL
Putative methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.676
MCA0708
Identified by similarity to GP:17132891; match to protein family HMM PF00535.
       0.618
MCA0709
Hypothetical protein; Identified by Glimmer2; putative.
       0.618
acyP
Acylphosphatase; Identified by similarity to SP:O29440; match to protein family HMM PF00708.
       0.615
MCA1070
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01768.
  
     0.418
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.