Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0716Hypothetical protein; Identified by Glimmer2; putative. (595 aa)    
Predicted Functional Partners:
MCA0769
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
  
 
 0.990
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
 
     0.854
MCA0770
Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.
  
 
 0.703
MCA2285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.647
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.569
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.507
MCA0715
Hemerythrin family protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.
   
   0.469
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.465
MCA2470
Ferredoxin, 4Fe-4S; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.462
MCA0527
Putative membrane protein; Identified by match to protein family HMM PF02517.
  
     0.453
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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