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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpnRRadical SAM domain/B12 binding domain protein; Required for methylation of hopanoids at the C-3 position. (515 aa)    
Predicted Functional Partners:
MCA0667
DedA family protein; Identified by similarity to SP:P09548; match to protein family HMM PF00597.
      
 0.667
holA
DNA polymerase III, delta subunit; Identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128.
      
 0.667
sqhC
Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
 
   
 0.635
MCA3113
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03455; match to protein family HMM PF03976.
   
    0.609
MCA0815
Identified by match to protein family HMM PF04055.
 
  
 0.509
MCA1203
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
     0.479
MCA0739
Conserved hypothetical protein; Displays ATPase and GTPase activities.
       0.471
MCA1190
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.446
MCA2777
Conserved hypothetical protein; Identified by similarity to GP:17427348.
  
  
 0.437
MCA0811
Identified by match to protein family HMM PF01048.
 
   
 0.429
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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