Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA0767Putative competence protein ComE; Identified by similarity to GP:10505056; match to protein family HMM TIGR00426. (116 aa)    
Predicted Functional Partners:
MCA2627
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.695
pilD
Leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.683
MCA0766
Hypothetical protein; Identified by Glimmer2; putative.
       0.555
MCA2139
Mg chelatase-related protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
  
  
 0.544
comF
Competence protein F; Identified by similarity to SP:P31773.
 
  
 0.509
MCA1115
General secretion pathway protein F; Identified by similarity to SP:P31744; match to protein family HMM PF00482.
  
  
 0.463
pilC
Type IV pilin biogenesis protein PilC; Identified by similarity to GP:151066; match to protein family HMM PF00482.
  
  
 0.463
ssb
Single-strand binding protein; Identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
  
 0.450
MCA1114
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.435
pilB
Type IV pilus assembly protein PilB; Identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.
  
  
 0.435
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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