STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0776Hypothetical protein; Identified by Glimmer2; putative. (189 aa)    
Predicted Functional Partners:
MCA0777
DNA binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
       0.773
MCA0778
Putative methanol utilization control sensor protein moxY; Identified by similarity to SP:P29905; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.
       0.773
mxaF
Methanol dehydrogenase protein, large subunit; Identified by similarity to SP:P16027; match to protein family HMM PF01011.
     
 0.767
MCA0780
MxaJ protein; Identified by similarity to GP:7258335.
     
 0.700
MCA1289
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.696
ribE-2
Riboflavin synthase, alpha subunit; Identified by similarity to SP:P29015; match to protein family HMM PF00677; match to protein family HMM TIGR00187.
      
 0.618
MCA2576
Formate dehydrogenase, alpha subunit; Identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.
      
 0.618
MCA2578
Molybdenum ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
      
 0.618
mopB
Outer membrane protein MopB; Identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412.
      
 0.618
MCA1225
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.