STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0807Copper resistance protein; Identified by match to protein family HMM PF05425. (559 aa)    
Predicted Functional Partners:
MCA0808
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01ST1872.
  
  
 0.820
MCA0811
Identified by match to protein family HMM PF01048.
 
     0.784
MCA0809
Putative acetylornithine aminotransferase; Identified by similarity to SP:Q58131; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.777
MCA0340
Putative membrane protein; Identified by similarity to GP:17133197.
  
     0.774
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
 
   
 0.767
MCA0810
Putative membrane protein; Identified by similarity to GP:3164083.
 
     0.766
MCA0080
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.758
MCA2718
Conserved hypothetical protein; Identified by similarity to GP:1785478.
  
     0.738
MCA1384
Methyltransferase, UbiE/COQ5 family.
  
     0.735
MCA1394
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.721
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.