Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0842GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (391 aa)    
Predicted Functional Partners:
MCA2070
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277.
 
 0.935
MCA0833
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
 
 
    0.919
MCA1440
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
 
  
 0.897
MCA1204
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 0.787
bsaA
Glutathione peroxidase; Identified by similarity to SP:P52035; match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
       0.651
leuS
leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.607
MCA1673
Sensory box protein/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
0.607
MCA1246
Putative methyltransferase CheR; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
0.551
MCA3081
Sensory box protein/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
0.548
MCA0831
Chemotaxis protein; Identified by similarity to SP:P18769; match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
  
 0.527
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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