Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA0855ErfK/YbiS/YcfS/YnhG family protein; Identified by similarity to OMNI:NTL03PA02854; match to protein family HMM PF01476; match to protein family HMM PF03734. (361 aa)    
Predicted Functional Partners:
MCA0606
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03756; match to protein family HMM PF03734.
 
  
 0.767
rdgC
Recombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
       0.696
MCA0853
Putative ATP-dependent protease; Identified by match to protein family HMM PF05362.
       0.499
MCA0796
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409.
 
     0.402
MCA1003
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471.
 
   
 0.401
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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