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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0862Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04843. (376 aa)    
Predicted Functional Partners:
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.788
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.785
MCA0860
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA05280; match to protein family HMM PF04340.
       0.784
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.764
MCA0863
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01616.
       0.744
MCA1544
Conserved hypothetical protein; Identified by similarity to GP:9949137.
  
     0.611
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.467
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.465
MCA0415
TPR domain protein; Identified by similarity to OMNI:NTL03PA01484; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.462
MCA2626
Conserved hypothetical protein; Identified by similarity to OMNI:VC1880.
  
     0.451
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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