STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0868Conserved hypothetical protein; Identified by similarity to GP:17131131. (365 aa)    
Predicted Functional Partners:
MCA0867
Smr domain protein; Identified by match to protein family HMM PF01713.
       0.773
MCA0866
Putative oxygen-independent coproporphyrinogen III oxidase family protein; Identified by similarity to GP:18145308; match to protein family HMM PF04055.
       0.578
MCA2119
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882.
  
     0.548
MCA0865
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04030; match to protein family HMM PF06167; Belongs to the MtfA family.
 
     0.496
polI
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.482
MCA2876
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.474
MCA0888
Conserved hypothetical protein; Identified by similarity to GP:18144127.
  
     0.460
MCA0223
Identified by similarity to GP:862325; match to protein family HMM PF03960; match to protein family HMM TIGR01616; Belongs to the ArsC family.
  
     0.435
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.