STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0873ATP-dependent protease La domain protein. (167 aa)    
Predicted Functional Partners:
MCA0874
Conserved hypothetical protein; Identified by similarity to SP:P77234.
       0.757
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.736
MCA2211
Identified by match to protein family HMM PF00899; match to protein family HMM PF05237.
    
 0.723
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
  
     0.711
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.689
MCA2605
Alpha amylase family protein; Identified by similarity to GP:6409238; match to protein family HMM PF00128.
  
 
   0.633
MCA2119
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882.
  
     0.588
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
MCA1130
Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
     
 0.565
MCA2285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.541
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.