Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
MCA0875Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family. (663 aa)    
Predicted Functional Partners:
MCA1217
Putative metalloprotease; Identified by match to protein family HMM PF07504.
 
 
 0.892
MCA2974
PKD domain protein.
  
   
 0.711
MCA2226
Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.
   
  
 0.644
MCA2227
Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
  
  
 0.643
MCA0338
Cytochrome c5530 family protein; Identified by similarity to GP:4325062.
  
  
 0.624
MCA0876
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.621
MCA2224
PKD domain protein; Identified by match to protein family HMM PF00801.
   
  
 0.620
MCA1028
Endonuclease; Identified by similarity to SP:P08466; match to protein family HMM PF01223.
     
 0.618
MCA1510
Fimbrial protein; Identified by similarity to SP:P05431; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532; Belongs to the N-Me-Phe pilin family.
      
 0.618
MCA2512
Acid phosphatase; Identified by similarity to GP:7650481; match to protein family HMM PF04185.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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