STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0875Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family. (663 aa)    
Predicted Functional Partners:
MCA1217
Putative metalloprotease; Identified by match to protein family HMM PF07504.
  
 
 0.826
MCA2703
Serine protease, trypsin family; Identified by match to protein family HMM PF00089.
 
 
 0.675
MCA0876
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.627
MCA1238
Polyketide synthase; Identified by similarity to GP:24575128; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01590; match to protein family HMM PF02801.
  
 
 0.603
MCA0448
5'-nucleotidase family protein; Identified by similarity to OMNI:DR0505; match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.
  
  
 0.562
MCA2328
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.517
MCA0874
Conserved hypothetical protein; Identified by similarity to SP:P77234.
       0.503
MCA0873
ATP-dependent protease La domain protein.
       0.493
MCA2974
PKD domain protein.
  
   
 0.433
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
 
    0.417
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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