Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
MCA0894ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (600 aa)    
Predicted Functional Partners:
MCA0168
ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.
   
0.910
MCA1006
Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.
  
 
 0.840
MCA1969
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
     
0.795
MCA2122
ABC transporter, ATP-binding protein; Identified by similarity to SP:P36879; match to protein family HMM PF00005.
 
  
 
0.744
MCA2117
Rhodanese-like domain/ankyrin repeat domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
   
 0.730
MCA0893
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
MCA1280
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005.
 
 
 
0.561
MCA2199
Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
   
 0.483
MCA0892
Conserved hypothetical protein; Identified by similarity to GP:18144126.
       0.473
MCA0891
Conserved hypothetical protein; Identified by similarity to GP:18159248; match to protein family HMM PF04055.
       0.457
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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