Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0920Identified by match to protein family HMM PF01522. (270 aa)    
Predicted Functional Partners:
MCA0919
Putative membrane protein; Identified by similarity to GP:17427439.
 
     0.945
MCA0918
Putative lipoprotein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.943
MCA0921
Conserved domain protein; Identified by similarity to GP:6959523.
 
     0.942
MCA0917
Conserved hypothetical protein.
 
     0.908
MCA0915
Putative membrane protein; Identified by similarity to GP:19483795.
 
     0.768
MCA0925
Beta-ketoacyl synthase domain protein; Identified by similarity to GP:17427436.
 
     0.764
MCA0926
Putative (3R)-hydroxymyristoyl-acyl-carrier-protein dehydratase; Identified by similarity to SP:P21773.
 
     0.764
MCA1494
Putative oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01494.
 
     0.749
MCA1497
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.747
MCA0914
Putative acyl carrier protein; Identified by similarity to SP:P20804.
 
     0.717
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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