Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA0921Conserved domain protein; Identified by similarity to GP:6959523. (241 aa)    
Predicted Functional Partners:
MCA0919
Putative membrane protein; Identified by similarity to GP:17427439.
 
     0.945
MCA0918
Putative lipoprotein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.942
MCA0920
Identified by match to protein family HMM PF01522.
 
     0.942
MCA0917
Conserved hypothetical protein.
 
     0.908
MCA0926
Putative (3R)-hydroxymyristoyl-acyl-carrier-protein dehydratase; Identified by similarity to SP:P21773.
 
     0.783
MCA1494
Putative oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01494.
 
     0.773
MCA0915
Putative membrane protein; Identified by similarity to GP:19483795.
 
     0.769
MCA0925
Beta-ketoacyl synthase domain protein; Identified by similarity to GP:17427436.
 
     0.760
MCA1496
Putative acyltransferase; Identified by match to protein family HMM PF01553.
 
     0.740
MCA1495
Conserved hypothetical protein; Identified by similarity to GP:2624947.
 
     0.730
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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