STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0928Sodium/hydrogen exchanger family protein; Identified by similarity to OMNI:NTL01SS00413. (430 aa)    
Predicted Functional Partners:
MCA0925
Beta-ketoacyl synthase domain protein; Identified by similarity to GP:17427436.
 
     0.812
MCA0926
Putative (3R)-hydroxymyristoyl-acyl-carrier-protein dehydratase; Identified by similarity to SP:P21773.
 
     0.797
MCA0927
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P51831; match to protein family HMM PF00106.
 
     0.762
MCA0924
Beta-ketoacyl synthase domain protein; Identified by similarity to GP:17427437; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.739
MCA0921
Conserved domain protein; Identified by similarity to GP:6959523.
  
     0.561
MCA0922
Putative membrane protein.
       0.531
MCA0923
Hypothetical protein; Identified by Glimmer2; putative.
       0.531
MCA1494
Putative oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01494.
 
    0.522
MCA0920
Identified by match to protein family HMM PF01522.
 
     0.422
MCA0769
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
     
 0.419
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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