STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0936CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587. (881 aa)    
Predicted Functional Partners:
MCA0933
CRISPR-associated protein, CT1975 family; Identified by similarity to GP:16504014; match to protein family HMM TIGR01869.
 
 
 0.985
MCA0932
CRISPR-associated protein, CT1976 family; Identified by similarity to OMNI:NTL01EC02697; match to protein family HMM TIGR01868.
 
 
 0.984
MCA0935
CRISPR-associated protein, CT1972 family; Identified by match to protein family HMM TIGR02547.
  
 
 0.945
cas1-2
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.925
MCA0934
CRISPR-associated protein, CT1973 family; Identified by match to protein family HMM TIGR02548.
  
  
 0.823
MCA0931
CRISPR-associated protein, CT1974 family; Identified by match to protein family HMM TIGR01907.
     
 0.658
MCA0929.1
CRISPR-associated protein Cas2; Identified by match to protein family HMM TIGR01873.
       0.615
MCA0336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.445
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.