STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0941Putative glycosyl hydrolase; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family. (808 aa)    
Predicted Functional Partners:
MCA0942
Putative oligo-1,6-glucosidase; Identified by similarity to PIR:JE0181; match to protein family HMM PF00128.
 
   
 0.839
MCA0943
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.799
MCA1586
Conserved hypothetical protein; Identified by similarity to GP:15978700.
 
   
 0.748
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
   
 0.651
MCA2747
Cellulose-binding domain protein; Identified by match to protein family HMM PF00553.
  
     0.621
MCA0623
Conserved domain protein; Identified by similarity to GP:11641086.
  
     0.576
MCA0944
Conserved domain protein.
       0.568
MCA2117
Rhodanese-like domain/ankyrin repeat domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
   
 0.542
MCA2199
Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
   
 0.542
MCA2780
Ankyrin repeat domain protein.
   
 0.542
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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