STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0941Putative glycosyl hydrolase; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family. (808 aa)    
Predicted Functional Partners:
MCA0942
Putative oligo-1,6-glucosidase; Identified by similarity to PIR:JE0181; match to protein family HMM PF00128.
 
   
 0.830
MCA0943
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.799
MCA1586
Conserved hypothetical protein; Identified by similarity to GP:15978700.
 
   
 0.727
cyp51
Cytochrome P450 51; Identified by similarity to SP:P77901; match to protein family HMM PF00067.
      
 0.627
MCA2747
Cellulose-binding domain protein; Identified by match to protein family HMM PF00553.
  
     0.621
sqs
Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.
      
 0.618
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
   
 0.612
MCA0623
Conserved domain protein; Identified by similarity to GP:11641086.
  
     0.576
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.573
MCA0944
Conserved domain protein.
       0.568
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.