STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0958Hypothetical protein; Identified by Glimmer2; putative. (248 aa)    
Predicted Functional Partners:
MCA0957
MgtC family protein; Identified by similarity to SP:P22037; match to protein family HMM PF02308.
       0.773
MCA0955
Hypothetical protein; Identified by Glimmer2; putative.
       0.598
MCA0956
Hydroxylamine oxydoreductase; Identified by similarity to SP:Q50925.
       0.598
MCA0959
HAD-superfamily hydrolase, subfamily IA, variant 3 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.
       0.598
MCA0960
Glyoxalase family protein; Identified by similarity to OMNI:NTL01BH3878; match to protein family HMM PF00903.
       0.598
MCA1109
2OG-Fe(II) oxygenase family domain protein; Identified by match to protein family HMM PF03171.
   
    0.577
MCA0961
Aminopeptidase I,M18 family; Identified by similarity to SP:Q9HYZ3; match to protein family HMM PF02127.
       0.444
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
       0.415
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.403
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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