STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0974Conserved domain protein; Identified by similarity to GP:17429246. (104 aa)    
Predicted Functional Partners:
MCA0975
ZIP Zinc transporter domain protein.
     0.987
rluD
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.735
MCA0973
Conserved hypothetical protein TIGR00726; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.733
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.532
MCA0970
Carbohydrate kinase, PfkB family; Identified by similarity to OMNI:DRA0055; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.
       0.511
MCA0080
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
MCA0527
Putative membrane protein; Identified by match to protein family HMM PF02517.
  
    0.473
MCA0564
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.455
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.454
MCA2181
Identified by match to protein family HMM PF00034.
  
     0.410
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.