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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0996Decarboxylase, thiamine pyrophosphate enzyme family; Identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02776. (549 aa)    
Predicted Functional Partners:
MCA0776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.561
ilvN
Acetolactate synthase, small subunit; Identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119.
 
  
 0.486
MCA0775
Alcohol dehydrogenase, zinc-containing; Identified by similarity to OMNI:MT1911; match to protein family HMM PF00107.
 
 
  
 0.469
MCA0994
Conserved hypothetical protein; Identified by similarity to GP:17428164.
       0.459
pheA
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.
      
 0.414
prlC
Identified by similarity to SP:P27298; match to protein family HMM PF01432.
 
      0.413
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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