STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1001Conserved hypothetical protein; Identified by similarity to GP:17135359; match to protein family HMM PF07883. (159 aa)    
Predicted Functional Partners:
MCA1002
Glutathione S-transferase domain protein; Identified by match to protein family HMM PF02798.
 
     0.836
MCA0221
Conserved domain protein; Identified by similarity to GP:17135185.
  
     0.647
MCA1132
Conserved hypothetical protein; Identified by similarity to GP:17131502.
  
     0.617
MCA1003
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471.
       0.515
MCA2227
Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
  
     0.469
MCA0945
Conserved hypothetical protein; Identified by similarity to SP:Q49116.
  
     0.446
MCA2226
Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.
  
     0.413
MCA2876
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.410
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.