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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1003Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471. (554 aa)    
Predicted Functional Partners:
MCA0796
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409.
 
     0.798
MCA1690
Penicillin-insensitive murein endopeptidase, truncation; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.596
MCA1001
Conserved hypothetical protein; Identified by similarity to GP:17135359; match to protein family HMM PF07883.
       0.515
MCA1002
Glutathione S-transferase domain protein; Identified by match to protein family HMM PF02798.
       0.515
MCA0637
Conserved domain protein; Identified by similarity to OMNI:NTL01SM02683.
  
   
 0.476
MCA0412
LysM domain protein; Identified by similarity to SP:P40680; match to protein family HMM PF01476; match to protein family HMM PF03734; match to protein family HMM PF05036.
 
   
 0.422
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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