STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1015Conserved domain protein. (267 aa)    
Predicted Functional Partners:
MCA1014
Hypothetical protein; Identified by Glimmer2; putative.
       0.782
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.764
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.734
MCA1017
Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF07993.
   
   0.670
MCA1016
Putative dioxygenase, iron-sulfur subunit; Identified by similarity to SP:O05616; match to protein family HMM PF00355.
       0.661
MCA2199
Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
  
 0.583
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.536
MCA2120
Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
    
 
 0.504
MCA1130
Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
    
  0.494
MCA1013
Putative membrane protein; Identified by similarity to GP:17427439.
       0.480
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.