Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA1015Conserved domain protein. (267 aa)    
Predicted Functional Partners:
MCA1014
Hypothetical protein; Identified by Glimmer2; putative.
       0.782
MCA2199
Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
   
 0.771
MCA1017
Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF07993.
   
   0.668
MCA1016
Putative dioxygenase, iron-sulfur subunit; Identified by similarity to SP:O05616; match to protein family HMM PF00355.
       0.661
MCA0474
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
   
   0.572
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.521
MCA1013
Putative membrane protein; Identified by similarity to GP:17427439.
       0.480
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.475
MCA2486
Identified by match to protein family HMM PF00850.
    
  0.437
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.410
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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