Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
MCA1017Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF07993. (328 aa)    
Predicted Functional Partners:
MCA1016
Putative dioxygenase, iron-sulfur subunit; Identified by similarity to SP:O05616; match to protein family HMM PF00355.
 
     0.866
MCA1013
Putative membrane protein; Identified by similarity to GP:17427439.
 
     0.795
sqhC
Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
  
   0.769
MCA2873
Squalene cyclase family protein; Identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787.
  
   0.766
MCA0118
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
    0.705
MCA0810
Putative membrane protein; Identified by similarity to GP:3164083.
  
     0.684
MCA0815
Identified by match to protein family HMM PF04055.
  
     0.681
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.680
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.676
MCA1015
Conserved domain protein.
   
   0.668
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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