STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1018ErfK/YbiS/YcfS/YnhG family protein; Identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734. (481 aa)    
Predicted Functional Partners:
MCA2329
Putative outer membrane efflux family protein; Identified by match to protein family HMM PF02321.
  
     0.727
MCA1013
Putative membrane protein; Identified by similarity to GP:17427439.
  
     0.710
MCA2326
Conserved domain protein.
  
     0.686
MCA1768
Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.
  
     0.674
MCA2325
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:8388788; match to protein family HMM TIGR01730.
  
    0.667
MCA3097
Conserved hypothetical protein; Identified by similarity to OMNI:VC2455.
  
     0.660
MCA1766
Putative heavy metal efflux system protein; Identified by similarity to SP:P13510; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.601
MCA1915
Cation-transporting ATPase, E1-E2 family; Identified by match to protein family HMM PF00122.
  
     0.573
MCA1019
Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC4376.
       0.548
MCA2236
Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA00696.
  
     0.543
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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