Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1027Conserved hypothetical protein; Identified by similarity to OMNI:CC1782; match to protein family HMM PF03929. (444 aa)    
Predicted Functional Partners:
MCA1028
Endonuclease; Identified by similarity to SP:P08466; match to protein family HMM PF01223.
       0.773
MCA2321
Putative TonB-dependent receptor; Identified by similarity to OMNI:CC0214; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.621
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
 
     0.561
MCA0808
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01ST1872.
  
    0.546
MCA2170
Putative copper resistance protein; Identified by similarity to SP:P12376; match to protein family HMM PF04234.
  
    0.546
MCA1029
Hypothetical protein; Identified by Glimmer2; putative.
       0.535
MCA2180
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.522
MCA1026
Hypothetical protein; Identified by Glimmer2; putative.
       0.486
MCA0340
Putative membrane protein; Identified by similarity to GP:17133197.
  
     0.446
MCA2232
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
     0.417
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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