Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1028Endonuclease; Identified by similarity to SP:P08466; match to protein family HMM PF01223. (319 aa)    
Predicted Functional Partners:
MCA1027
Conserved hypothetical protein; Identified by similarity to OMNI:CC1782; match to protein family HMM PF03929.
       0.773
MCA2736
Conserved hypothetical protein; Identified by similarity to GP:17429181.
   
   0.773
MCA2512
Acid phosphatase; Identified by similarity to GP:7650481; match to protein family HMM PF04185.
  
   
 0.668
MCA2900
Prophage MuMc02, DNA methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
      
 0.627
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
  
 0.621
MCA0875
Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family.
     
 0.618
MCA1217
Putative metalloprotease; Identified by match to protein family HMM PF07504.
      
 0.618
MCA2224
PKD domain protein; Identified by match to protein family HMM PF00801.
      
 0.618
MCA2543
Ribonucleoside reductase precursor; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
      
 0.618
MCA2632
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS3173.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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