MCA1082 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MCA1082

Hypothetical protein; Identified by Glimmer2; putative. (112 aa)

Predicted Functional Partners:

pilE

0.618

MCA0087

0.618

MCA0090

0.618

MCA0091

0.618

MCA0155

0.618

MCA0303

0.618

MCA0306

0.618

MCA0553

0.618

MCA0555

0.618

mxaF

0.618

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0087	MCA0090	MCA0087	MCA0090	Conserved domain protein.	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	0.992
MCA0087	MCA0091	MCA0087	MCA0091	Conserved domain protein.	Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.979
MCA0087	MCA0155	MCA0087	MCA0155	Conserved domain protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.585
MCA0087	MCA0303	MCA0087	MCA0303	Conserved domain protein.	Putative lipoprotein; Identified by match to protein family HMM PF05229.	0.605
MCA0087	MCA0306	MCA0087	MCA0306	Conserved domain protein.	Putative spore coat protein, late developmental; Identified by similarity to SP:P27755; match to protein family HMM PF05229.	0.618
MCA0087	MCA0553	MCA0087	MCA0553	Conserved domain protein.	Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.	0.605
MCA0087	MCA0555	MCA0087	MCA0555	Conserved domain protein.	ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.	0.605
MCA0087	MCA1082	MCA0087	MCA1082	Conserved domain protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.618
MCA0087	pilE	MCA0087	MCA0086	Conserved domain protein.	Type 4 fimbrial biogenesis protein PilE; Identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.994
MCA0090	MCA0087	MCA0090	MCA0087	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Conserved domain protein.	0.992
MCA0090	MCA0091	MCA0090	MCA0091	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.984
MCA0090	MCA0155	MCA0090	MCA0155	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by Glimmer2; putative.	0.582
MCA0090	MCA0303	MCA0090	MCA0303	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Putative lipoprotein; Identified by match to protein family HMM PF05229.	0.604
MCA0090	MCA0306	MCA0090	MCA0306	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Putative spore coat protein, late developmental; Identified by similarity to SP:P27755; match to protein family HMM PF05229.	0.618
MCA0090	MCA0553	MCA0090	MCA0553	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.	0.604
MCA0090	MCA0555	MCA0090	MCA0555	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.	0.604
MCA0090	MCA1082	MCA0090	MCA1082	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Hypothetical protein; Identified by Glimmer2; putative.	0.618
MCA0090	pilE	MCA0090	MCA0086	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	Type 4 fimbrial biogenesis protein PilE; Identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.987
MCA0091	MCA0087	MCA0091	MCA0087	Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Conserved domain protein.	0.979
MCA0091	MCA0090	MCA0091	MCA0090	Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.	Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.	0.984

page 1 of 5

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Co-expression

Experiments

Fusion

© STRING Consortium 2026

Credits

Access

Info

About