STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1103Identified by match to protein family HMM PF00753. (239 aa)    
Predicted Functional Partners:
MCA2851
Rhodanese domain protein; Identified by similarity to GP:17427305; match to protein family HMM PF00581.
 
 
   0.915
MCA1184
Conserved hypothetical protein; Identified by similarity to GP:9478255.
 
      0.889
MCA1104
Putative membrane protein; Identified by similarity to GP:17133040; match to protein family HMM PF01925.
 
     0.882
MCA1816
Rhodanese-like domain; Identified by match to protein family HMM PF00581.
   0.799
MCA3004
Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
 0.694
MCA1800
Putative oxidoreductase; Identified by similarity to GP:19879585; match to protein family HMM PF07992.
 
 
 0.627
MCA1102
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.481
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654.
       0.456
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.445
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203.
       0.436
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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